Skip to main content
    Ivy Biosciences Docs/Workflows/Workflows/Chemistry and sourcing/Search Compounds

    Search Compounds

    Search Compounds: a data recipe chaining pubchem, chembl.

    Generated recipe

    Seeded from a curated quick-action prompt. The prompt below runs the real routing — copy it, change the target, and run.

    Best fit: search compounds — a data goal.

    The prompt

    Search ChEMBL for EGFR inhibitors with IC50 < 100 nM, run ADMET-AI on the top 20 for hERG and CYP3A4, then dock the 5 best-profiled hits against EGFR kinase (PDB: 1M17) with DiffDock to confirm binding mode - rank by a composite ADMET × docking confidence score in the sandbox and generate a prioritized shortlist with a scatter plot of ADMET score vs DiffDock confidence for synthesis planning?

    What each tool contributes

    • pubchem — HTS bioassay results and activity summaries
    • chembl — Curated IC50/Ki/Kd from medicinal chemistry literature

    Why these tools pair

    PubChem covers HTS assay data while ChEMBL focuses on curated medicinal chemistry — together they give complete bioactivity picture

    Data flow

    Every tool operates on the same input: compound_name.

    Was this page helpful?

    On this page

    On this page

    Loading...