Analyze Single-Cell Data
Analyze Single-Cell Data: a genomics recipe chaining scanpy.
recipesgenomics
Generated recipe
Seeded from a curated quick-action prompt. The prompt below runs the real routing — copy it, change the target, and run.
Best fit: analyze single-cell data — a genomics goal.
The prompt
What each tool contributes
- scanpy — Differential expression, marker gene ranking per cluster
- mygene query — Gene annotation with GO terms, pathways, cross-references
- enrichr enrichment — KEGG, Reactome, GO pathway enrichment analysis
Why these tools pair
Scanpy DE identifies marker genes, MyGene annotates them, Enrichr runs pathway enrichment — full functional characterization pipeline
Data flow
Every tool operates on the same input: gene_list.
Read next
- Which tool? — match a single goal to a tool.
- Workflows — every workflow and recipe.
- How the orchestrator picks tools — the same chain from a plain-language goal.
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